LabKey Server is open source software that helps scientists manage, analyze, and share complex datasets. It supports tandem mass spectrometry, flow cytometry, assays for neutralizing antibodies, Luminex, observational studies, and secure, Web-based collaboration. The software is modular, configurable, and customizable. It can be installed in your institution on any modern hardware and operating system. It is designed to integrate with your existing systems, instruments, and work flows, and to be readily adapted by skilled programmers to novel methods of inquiry. The project is under active development by a team of professional software engineers and a community of active contributors. New versions are released about four times per year.
Erudite is an application for training and testing back propogation neural networks using the ANNeML (Artifical Neural Network Markup Language) XML format. It supports testing and training neural nets with CSV files and has support for randomized training sets, optional adapting learning rate, sigmoid or hyperbolic tangent transfer functions, optional bias and weight adjustment locking, and more.
Weed-FS is a simple and highly scalable distributed file system. There are two objectives: to store billions of files, and to serve the files fast! Instead of supporting full POSIX file system semantics, it implements only a key-file mapping. Instead of managing all file metadata in a central master, it manages file volumes in the central master and lets volume servers manage files and the metadata. This relieves concurrency pressure from the central master and spreads file metadata into volume servers' memories, allowing faster file access with just one disk read operation. It is modelled on Facebook's Haystack design paper. Only 40 bytes of disk storage are required for each file's metadata, and disk reads are O(1).
dput-webdav is a "dput" upload method plugin with extended WebDAV support. It was written specifically with Artifactory and Bintray in mind. It tries to be compatible with the "http" plugin, but offers additional features: login credentials can include the password, "incoming" can be a full URL (optionally containing dynamic package metadata, and supporting HTTPS), and distributions can be mapped to repository names.
Quoddy is an open source enterprise social network, which shares a common "look and feel" and substantial functionality, with consumer facing social networks like Facebook and Google+, as well as proprietary products from Jive Software and Yammer. It makes up one component of the Fogcutter Suite. It is intended mainly for organizational use and therefore has capabilities which make it uniquely suited to provide the social fabric to support organizational knowledge sharing, knowledge transfer, collaboration, and decision support.