LabKey Server is open source software that helps scientists manage, analyze, and share complex datasets. It supports tandem mass spectrometry, flow cytometry, assays for neutralizing antibodies, Luminex, observational studies, and secure, Web-based collaboration. The software is modular, configurable, and customizable. It can be installed in your institution on any modern hardware and operating system. It is designed to integrate with your existing systems, instruments, and work flows, and to be readily adapted by skilled programmers to novel methods of inquiry. The project is under active development by a team of professional software engineers and a community of active contributors. New versions are released about four times per year.
Naked Objects is an application development platform. It's called Naked Objects because all you need to develop are your domain objects; the Naked Objects platform automatically creates an object-oriented user interface (giving you the choice of different styles) and the underlying storage mechanism (again, giving you the choice as how to persist your objects).
Raptor is a C library providing a set of parsers and serializers for Resource Description Framework (RDF) triples by parsing syntaxes into RDF triples and serializing triples into a syntax. The parsers support RDF/XML, N-Triples, GRDDL, and Turtle, and via RSS tag soup: XML RSS, Atom 0.3, and Atom 1.0. The serializers support RDF/XML (3 flavours), Turtle, DOT, N-Triples, RSS 1.0, and Atom 1.0. Raptor handles RDF/XML as used by RDF applications such as RSS 1.0, FOAF, DOAP, Dublin Core, and OWL. It can use either expat or libxml2 for XML parsing, libcurl when available for URI retrieval, and is portable to many POSIX systems.
Redland is a set of C libraries providing a high-level API for the Resource Description Framework (RDF), allowing it to be stored, parsed, serialized, queried, and manipulated. It has an object-based, modular design and comes with detailed reference documentation and examples. Redland supports all RDF vocabularies such as FOAF, RSS 1.0, Dublin Core, DOAP, and OWL, the query languages SPARQL and RDQL, and all RDF syntaxes including Turtle, RDF/XML, RDF/JSON, RSS, Atom, RDFa, and GRDDL.
ReportNG is a simple HTML reporting plug-in for the TestNG unit-testing framework. It is intended as a replacement for the default TestNG HTML report. The default report is comprehensive but is not so easy to understand at-a-glance. ReportNG provides a simple, color-coded view of the test results. ReportNG generates 100% valid XHTML 1.0 files. The output can be customised by replacing the default stylesheet with your own CSS file. ReportNG also includes a second reporter that produces JUnit format XML output.
RestyGWT is a GWT generator for REST services and JSON encoded data transfer objects. RestyGWT Rest Services allow you to define an asynchronous service API which is then implemented via GWT deferred binding by RestyGWT. It features generation of asynchronous RESTful JSON based service proxies, encoding and decoding of Java objects to JSON, and an easy-to-use REST API.
Rome is a set of Atom/RSS Java utilities that make it easy to work in Java with most syndication formats. It accepts all current flavors of RSS (0.90, 0.91, 0.92, 0.93, 0.94, 1.0, and 2.0) and Atom 0.3 feeds. Rome includes a set of parsers and generators for the various flavors of feeds, as well as converters to convert from one format to another. The parsers can give you back Java objects that are either specific for the format you want to work with, or a generic normalized SyndFeed object that lets you work on with the data without bothering about the underlying format.
Serene is a validation engine that implements the JAXP 1.3 Validation Framework API for RELAX NG based on an algorithm centered on providing good messages and having a clear handling of ambiguity and conflicts. It has an implementation of the JAXP Validation Framework API for ISO Schematron and support for Schematron markup embedded in RELAX NG schemas.
ServingXML is a markup language for expressing XML pipelines and an extensible Java framework for defining the elements of the language. It defines a vocabulary for expressing flat-XML, XML-flat, flat-flat, and XML-XML transformations in pipelines. The accompanying console app supports reading content as XML files, flat files, SQL queries, or SAX events, and writing it as XML, HTML, PDF, or mail attachments. This software is especially suited for converting flat file or database records to XML, with its support for namespaces, variant record types, multi-valued fields, segments and repeating groups, hierarchical grouping of records, and row-by-row validation with XML Schema. There is also an API for embedding the software in a Java application.