ProteomeCommons.org Java Analysis Framework is a framework for referencing common mass spectrometry data such as atoms and residues. This framework provides a programmer with an easy-to-use library for writing programs that rely on common mass spectrometry data. The framework also contains utilities such as an isotope calculator and a reference for residue abbreviations.
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.
UIMA SDK is a software architecture and framework for supporting the development, integration, and deployment of search and analysis technologies. It can be used to analyze large volumes of unstructured information (text, audio, video, images, etc.) to discover, organize, and deliver relevant knowledge to the client or application end user.
Daisy is an enterprise content management solution, bridging the gap between classic Web site content management and the Wiki style of information management and discovery. It is ideally suited for intranet knowledge bases, product and/or project documentation, and management of content-rich Web sites. It consists of a repository server with powerful querying and versioning capabilities, and a Wiki-like front-end Web user interface with in-browser rich-text authoring.
The mission of the Apache Portable Runtime (APR) project is to create and maintain software libraries that provide a predictable and consistent interface to underlying platform- specific implementations. The primary goal is to provide an API to which software developers may code and be assured of predictable if not identical behaviour regardless of the platform on which their software is built, relieving them of the need to code special-case conditions to work around or take advantage of platform-specific deficiencies or features.
Wine Management tracks wine production from harvest through bottling. As a record keeping system, it tracks history of wine compositions in all detail. It tracks variety, area, year, yield, and taste. Because it accumulates wine lost to processing and updates the yields, you always know the values when it was produced. Quantities processed by work center are kept up to date. Almost any level of inventory is available by month, including any combination of variety, area, year, taste, storage, and others. Tank lineup may prove very profitable with faster processing and reduced cellar cost and crews. It can find the best pipes to use based on either number of pipes, flow, or heat loss.
ServingXML is a markup language for expressing XML pipelines and an extensible Java framework for defining the elements of the language. It defines a vocabulary for expressing flat-XML, XML-flat, flat-flat, and XML-XML transformations in pipelines. The accompanying console app supports reading content as XML files, flat files, SQL queries, or SAX events, and writing it as XML, HTML, PDF, or mail attachments. This software is especially suited for converting flat file or database records to XML, with its support for namespaces, variant record types, multi-valued fields, segments and repeating groups, hierarchical grouping of records, and row-by-row validation with XML Schema. There is also an API for embedding the software in a Java application.