JewelCLI provides an API to parse command line arguments. It uses Java annotations to present a very simple but powerful interface. Options are defined using an annotated Java interface definition. This allow a declarative style which can be much clearer than the procedural style used by some other Java CLI libraries.
SitemapGen4j is a Java library to generate XML sitemaps. It supports gzipped output, sitemap validation, and sitemap index generation. It can also generate Google-specific sitemaps, such as Mobile sitemaps, Geo sitemaps, Code Search sitemaps, Google News sitemaps, and Video sitemaps.
J4ME is a library to help with J2ME development. It includes a UI framework for professional-looking and intuitive interfaces, a logging framework to help debugging platform-specific issues found on different phones, a Bluetooth GPS integrated into the JSR-179 Location API, and a library of missing J2ME methods and helpful collections for small devices.
The Secure Storage service for the gLite middleware provides users with a set of tools for storing data securely and in an encrypted format on the grid storage elements. Data is accessible and readable by authorized users only. Moreover, it solves the insider abuse problem by also preventing administrators of the storage elements from accessing the confidential data in a clear format. The service has been designed and developed for the grid middleware of the EGEE Project, gLite, in the context of the TriGrid VL Project.
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.
ProteomeCommons.org Java Analysis Framework is a framework for referencing common mass spectrometry data such as atoms and residues. This framework provides a programmer with an easy-to-use library for writing programs that rely on common mass spectrometry data. The framework also contains utilities such as an isotope calculator and a reference for residue abbreviations.