Log4php is a PHP port of Log4j, the most popular Java logging framework. It supports configuration through XML and properties files (with the same structure as log4j) and custom Configurators. File, RollingFile, DailyFile, Echo, Console, Mail, PEAR::Db, PHP error, Syslog or NT events, and socket appenders are supported. Simple, TTCC, Pattern, Html, and Xml Layouts are supported. It also supports Filters, custom Levels, and Loggers. Internal debugging can be switched on and off. Log4php can be used inside a class or inside a main/sub function.
ServingXML is a markup language for expressing XML pipelines and an extensible Java framework for defining the elements of the language. It defines a vocabulary for expressing flat-XML, XML-flat, flat-flat, and XML-XML transformations in pipelines. The accompanying console app supports reading content as XML files, flat files, SQL queries, or SAX events, and writing it as XML, HTML, PDF, or mail attachments. This software is especially suited for converting flat file or database records to XML, with its support for namespaces, variant record types, multi-valued fields, segments and repeating groups, hierarchical grouping of records, and row-by-row validation with XML Schema. There is also an API for embedding the software in a Java application.
Daisy is an enterprise content management solution, bridging the gap between classic Web site content management and the Wiki style of information management and discovery. It is ideally suited for intranet knowledge bases, product and/or project documentation, and management of content-rich Web sites. It consists of a repository server with powerful querying and versioning capabilities, and a Wiki-like front-end Web user interface with in-browser rich-text authoring.
ProteomeCommons.org Java Analysis Framework is a framework for referencing common mass spectrometry data such as atoms and residues. This framework provides a programmer with an easy-to-use library for writing programs that rely on common mass spectrometry data. The framework also contains utilities such as an isotope calculator and a reference for residue abbreviations.