Cypress is an open-source Cascading Style Sheet (CSS) parser that lets you add well-documented, standardized name/value pairs (a.k.a. CSS style properties) to your own XML markup languages. It supports inline styles so you can add style properties to individual XML tags using the style attribute or external style sheets so that you can store style rules for reuse in separate, XML-free text documents. Cypress supports three forms of selectors to match your XML tags and style rules, that is, element selectors, class selectors, and id selectors.
Rome is a set of Atom/RSS Java utilities that make it easy to work in Java with most syndication formats. It accepts all current flavors of RSS (0.90, 0.91, 0.92, 0.93, 0.94, 1.0, and 2.0) and Atom 0.3 feeds. Rome includes a set of parsers and generators for the various flavors of feeds, as well as converters to convert from one format to another. The parsers can give you back Java objects that are either specific for the format you want to work with, or a generic normalized SyndFeed object that lets you work on with the data without bothering about the underlying format.
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.
While the author of BSAX-J has not yet come to a final conclusion about the need for a binary XML format, BSAX is his idea of one possible encoding that leverages other XML prior art (SAX events and UTF-8, in particular). It is complete in that it can be used to perform round-trip conversions from textual XML to SAX events to BSAX binary streams, and back to SAX events and textual XML. The test code in the distribution does exactly that for a simple example XML file, and measures the difference in file size (the file is slightly smaller for the BSAX encoding of the sample file) and the difference in read time (the read time is significantly faster for the sample file).
Isobel is a framework to build complex information retrieval and analysis systems. Isobel can be functionally divided in two subsytems, Isobel Gatherer (the crawling and filtering subsystem) and Isobel Analyzer (the analysis subsystem). The two subsytems can also be used separately. Isobel Gatherer offers ready-to-use services like content fetching, scheduling, document format conversion, Hyperlink graph storage and analysis, content storage and indexing. A programmer may easily add new services. Isobel Analyzer uses the IBM UIMA architecture to reuse the analysis components developed for this architecture.
Apache XML Graphics Commons is a library that consists of several reusable components used by Apache Batik and Apache FOP. Many of these components can easily be used separately outside the domains of SVG and XSL-FO. You will find components such as a PDF library, an RTF library, Graphics2D implementations that let you generate PDF and PostScript files, and much more.