XMLBeans is a technology for accessing XML by binding it to Java types. XMLBeans provides several ways to get at the XML. You can do this through XML schema that has been compiled to generate Java types that represent schema types. In this way, you can access instances of the schema through JavaBeans-style accessors after the fashion of "getFoo" and "setFoo". The XMLBeans API also allows you to reflect into the XML schema itself through an XML Schema Object model. There is a cursor model through which you can traverse the full XML infoset. There is support for XML DOM.
Zorba is a general-purpose XQuery processor implementing in C++ the W3C family of specifications. It is not an XML database. The query processor has been designed to be embeddable in a variety of environments, such as other programming languages extended with XML processing capabilities, browsers, database servers, XML message dispatchers, or smartphones. Its architecture employes a modular design, which allows customizing the Zorba query processor to the environment’s needs. In particular, the architecture of the query processor allows a pluggable XML store (e.g. main memory, DOM stores, persistent disk-based large stores, and S3 stores).
LabKey Server is open source software that helps scientists manage, analyze, and share complex datasets. It supports tandem mass spectrometry, flow cytometry, assays for neutralizing antibodies, Luminex, observational studies, and secure, Web-based collaboration. The software is modular, configurable, and customizable. It can be installed in your institution on any modern hardware and operating system. It is designed to integrate with your existing systems, instruments, and work flows, and to be readily adapted by skilled programmers to novel methods of inquiry. The project is under active development by a team of professional software engineers and a community of active contributors. New versions are released about four times per year.