ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.
RepoGuard is an advanced validation framework with built-in integrations for several common version control systems. The integration is carried out by utilizing the hook mechanisms each version control system provides. The user may provide configurations that are processed through inversion of control mechanisms. RepoGuard is completely written in the Python programming language, which allows for easy integration of other tools. An extensible command line tool for advanced usage is provided, which allows for comfortable administration.