Amiba is a Gene Expression Programming (GEP) framework for Java. GEP is, like genetic algorithms, a branch of evolutionary computing. The framework separates the process of evolution from the process of interpretation of the chromosome, allowing the use of various schemes. For example, graphs may be used as terminals and graph operations as operators in the chromosome instead of the usual double precision numbers. It implements mutation, transposition, and recombination. Options and rates are easily configured through an XML file. A mechanism to load fitness cases in bulk is also provided.
Webcockpit is a Web application generator for reporting and monitoring applications. It generates complete JSP-based Web applications which contain charts and tables whose contents are retrieved using database queries. The charts and tables can be configured to link to each other, enabling master detail-like drill-down. You can provide your own HTML or JSP template files which are mixed with the generated JSP to provide a final Web application.
MinimalModbus is an easy-to-use Python module for talking to instruments (slaves) from a computer (master) using the Modbus protocol. Example code includes drivers for Eurotherm and Omega process controllers. The only dependency is the pySerial module. This software supports the ‘Modbus RTU’ serial communication version of the protocol, and is intended for use on Linux, OS X, and Windows platforms. It has been tested with Python2.6, Python2.7, and Python3.2.
The gLite distribution is an integrated set of components designed to enable resource sharing. In other words, this is middleware for building a grid. The gLite middleware is produced by the EGEE project. The distribution model is to construct different services ("node-types") from these components and then ensure easy installation and configuration on the chosen platforms.
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.