With MetaModel, you use a type-safe SQL-like API for querying any datastore. It is a data access framework providing a common interface for exploration and querying of different types of datastores. It isn't a data mapping framework. Instead, it emphasizes abstraction of metadata and the ability to add data sources at runtime, making MetaModel great for generic data processing applications, but less so for applications modeled around a particular domain.
Studs MVC Framework+ contains a port of Apache's Jakarta Struts to PHP, though the libraries included in the rest of the project are much more vast. In order to implement the Struts port, it was necessary to build a core, object-oriented API in the style of the JDK and the Jakarta Commons, a servlet container to handle HTTP requests and to invoke servlet classes, and finally, a parsing engine for JSP-style template pages. In the end, the result is an environment which is very similar to that provided by a J2EE Web Container, only everything is implemented in PHP. While it was possible to carry over many of the concepts, designs and mechanisms from J2EE, some limitations do exist due to the nature of the PHP programming language, such as the lack of checked exceptions (runtime only).
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.
CollabNet Connector Framework is an Openadaptor-based SDK that allows rapid integrations and migrations dealing with the artifact data shared between different tools in the ALM cycle in combination with the collaborative platforms from CollabNet. It features bidirectional, out-of-the-box tracker integration between HP Quality Center, CollabNet SourceForge Enterprise, CollabNet Enterprise Edition, database tables, and CSV files.