LabKey Server is open source software that helps scientists manage, analyze, and share complex datasets. It supports tandem mass spectrometry, flow cytometry, assays for neutralizing antibodies, Luminex, observational studies, and secure, Web-based collaboration. The software is modular, configurable, and customizable. It can be installed in your institution on any modern hardware and operating system. It is designed to integrate with your existing systems, instruments, and work flows, and to be readily adapted by skilled programmers to novel methods of inquiry. The project is under active development by a team of professional software engineers and a community of active contributors. New versions are released about four times per year.
Ding is a PHP framework that provides dependency injection (by Setter, Constructor, and Method), Aspect Oriented Programming, XML, YAML, Events support, and some JSR 250/330 annotations as bean definition providers, lightweight, can be deployed as a PHAR file, simple, and quick MVC, syslog, TCP client and server with non-blocking sockets, timers, and custom error, signal, and exception handling, PAGI integration (for the Asterisk gateway interface), and PAMI integration (for Asterisk management). It is similar to Java's Seasar and Spring.
Ametys is a powerful Web CMS used by many institutions of higher education and government, but also industries and SMEs. It is known for its ergonomic design which promotes ease of use, its social Web functionality, and the ability to manage a large number of users. It makes content publishing accessible for the non-programmer and provides an easy editorial interface very similar to Microsoft Office applications.
Citrus is a test framework written in Java that enables automated integration testing of message-based enterprise SOA applications. The tool can easily simulate surrounding systems across various transports and protocols (e.g. JMS, SOAP WebServices, HTTP, TCP/IP, etc.) in order to perform end-to-end use case testing. Citrus provides strong validation mechanisms for XML message contents and allows you to build complex testing logic such as sending and receiving messages, database validation, automatic retries, variable definitions, dynamic message contents, error simulation, and many more.
SharpTAL compiles XML-based templates to .NET assemblies. It contains a complete implementation of the Zope Page Templates (ZPT) language, a system which can generate HTML, XML, or plain text output. ZPT is formed by the Template Attribute Language (TAL), the Expression Syntax (TALES), and the Macro Expansion Template Attribute Language (METAL).
Serene is a validation engine that implements the JAXP 1.3 Validation Framework API for RELAX NG based on an algorithm centered on providing good messages and having a clear handling of ambiguity and conflicts. It has an implementation of the JAXP Validation Framework API for ISO Schematron and support for Schematron markup embedded in RELAX NG schemas.
Zorba is a general-purpose XQuery processor implementing in C++ the W3C family of specifications. It is not an XML database. The query processor has been designed to be embeddable in a variety of environments, such as other programming languages extended with XML processing capabilities, browsers, database servers, XML message dispatchers, or smartphones. Its architecture employes a modular design, which allows customizing the Zorba query processor to the environment’s needs. In particular, the architecture of the query processor allows a pluggable XML store (e.g. main memory, DOM stores, persistent disk-based large stores, and S3 stores).
Raptor is a C library providing a set of parsers and serializers for Resource Description Framework (RDF) triples by parsing syntaxes into RDF triples and serializing triples into a syntax. The parsers support RDF/XML, N-Triples, GRDDL, and Turtle, and via RSS tag soup: XML RSS, Atom 0.3, and Atom 1.0. The serializers support RDF/XML (3 flavours), Turtle, DOT, N-Triples, RSS 1.0, and Atom 1.0. Raptor handles RDF/XML as used by RDF applications such as RSS 1.0, FOAF, DOAP, Dublin Core, and OWL. It can use either expat or libxml2 for XML parsing, libcurl when available for URI retrieval, and is portable to many POSIX systems.