LabKey Server is open source software that helps scientists manage, analyze, and share complex datasets. It supports tandem mass spectrometry, flow cytometry, assays for neutralizing antibodies, Luminex, observational studies, and secure, Web-based collaboration. The software is modular, configurable, and customizable. It can be installed in your institution on any modern hardware and operating system. It is designed to integrate with your existing systems, instruments, and work flows, and to be readily adapted by skilled programmers to novel methods of inquiry. The project is under active development by a team of professional software engineers and a community of active contributors. New versions are released about four times per year.
jOOX stands for Java Object Oriented XML. It is a simple wrapper for the org.w3c.dom package to allow for fluent XML document creation and manipulation where DOM is required but too verbose. jOOX only wraps the underlying document and can be used to enhance DOM, not as an alternative. It is inspired by jOOQ and jQuery.
TIXI is a fast and simple XML interface library for applications written in C, C++, Fortran, Java, and Python. Although simplified and somewhat restricted compared to a fully-fledged XML processing library, it can create documents, create and delete nodes, and add and remove element attributes. Routines for reading and writing text nodes and nodes holding integer and floating point numbers are included, along with routines that process aggregates of these simple types for the processing of geometric data, multidimensional arrays, or arrays of vectors.
Serene is a validation engine that implements the JAXP 1.3 Validation Framework API for RELAX NG based on an algorithm centered on providing good messages and having a clear handling of ambiguity and conflicts. It has an implementation of the JAXP Validation Framework API for ISO Schematron and support for Schematron markup embedded in RELAX NG schemas.
The Chameleon Problem Solving Environment is based on the CPACS data format and allows third party application coupling for multidisciplinary simulation. It comprises a set of libraries and integration components for the commercial integration environment ModelCenter or the open source alternative RCE (http://www.rcenvironment.de/). It was initially developed from the German Aerospace Center (DLR).
metagloss is an annotation-centric Android library for reducing boilerplate code. Relying on run-time parsing and compile-time code generation, metagloss provides facilities for mapping XML and databases to data objects, dealing with preference screens and working with DB queries.
The Apache ODF Toolkit is a set of Java modules that allow programmatic creation, scanning, and manipulation of Open Document Format (ISO/IEC 26300 == ODF) documents. Unlike other approaches that rely on runtime manipulation of heavy-weight editors via an automation interface, the ODF Toolkit is lightweight and ideal for server use.