Icwri is a lightweight, very simple, service-oriented Java built-in script. It can help Java developers build some application interfaces in a service-oriented style. It can also help non-technical people join the development team to write their own application scripts to enforce business rules and decisions. Icwri service providers and consumers can be either Icwri scripts or Java classes. An Icwri script can run all alone, but the primary purpose of Icwri script is to have an assistant language of Java. It can run on any system with JDK/JRE 1.5 or above installed. It does not support Java SE 6 Script Engine because of the service-oriented design and the requirement to support Java SE 1.5 users.
Wiseman is an implementation of the WS-Management specification for the Java SE platform. The project scope includes the WS-Management specification and its dependent specifications, which can be found at http://www.dmtf.org/standards/wbem/wsman/. The project requires Java SE 5+ or above, and is built on JAXB 2.0 and SAAJ 1.3 (part of the JAX-WS project). Ant scripts for standalone and Netbeans builds are supplied.
VRaptor 2 is a Web-based MVC and IOC framework based on many frameworks and ideas (Seam, Stripes, Webwork, Hibernate Annotations, etc). It makes full use of Java 5 Annotations. It favors convention over configuration, because configuration in XML/properties/annotations is always easy to make mistakes and repetitive (aka copy and paste in many places). This framework uses a more imperative approach, instead of having many XML files to configure lifecycle and other properties. Most of the settings go inside plain Java objects (POJO), so the team knows exactly what is going on and where.
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.