Projects / Staden Package

Staden Package

The Staden Package is a set of interactive tools for DNA sequence assembly and editing, as well as DNA and protein sequence analysis, the best known of which is "gap4".

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Recent releases

  •  03 Jan 2006 15:30

    Release Notes: The main changes in this release, in addition to the usual round of bugfixes, are the support in Gap4 for very large databases (64-bit file sizes), support for traces from the "454" instrument, and support for a new SNP Candidates plot, allowing visualization of likely SNPs or collapsed repeats and tools to split these into their constituent haplotypes. In addition, substantial speed improvements have been made.

    •  09 Nov 2004 18:40

      Release Notes: Primarily Gap4 changes. This includes new plots and search functions designed to highlight sequence variations (or misassemblies), template status improvements, and a multitude of more minor adjustments and bugfixes.

      •  04 May 2004 14:11

        No changes have been submitted for this release.

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