Projects / Shrubberies - Linux Command Line Viewer

Shrubberies - Linux Command Line Viewer

slcview allows you to fully script creation of clustergrams and tree diagrams from .cdt, .gtr, and .atr files as output by several biologically-oriented clustering programs, namely Cluster and XCluster. Many options allow you control of the output, and, in addition, slcview allows you to create an annotated legend with the same scale of colors as used in your clustergram.

Operating Systems

Recent releases

  •  16 Sep 2003 03:50

    Release Notes: Code reorganization was done. The module was added, which allows all the main working procedures to be used by others more easily. Other minor algorithm and organization changes were made. Default options may now be specified in system slcview.conf and user .slcviewrc files. A basic autoscaling of gtrresolution, atrresolution, genelabels, and arraylabels is now done.

    •  14 Apr 2003 02:01

      Release Notes: Legend file output has been tweaked. Command line color options work as they should now.

      •  26 Mar 2002 23:14

        Release Notes: Writing the gene and array labels caused a few bugs when you were missing either a .gtr or .atr file. Those should be fixed now.

        •  25 Mar 2002 01:09

          Release Notes: This release adds the ability to draw gene and array labels. The legend image orientation has been changed, and is labeled more thoroughly.

          •  22 Mar 2002 08:46

            No changes have been submitted for this release.


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