Projects / mkESA
mkESA
mkESA is a program for constructing enhanced suffix arrays (ESAs) from biological sequence data. The program is based on an implementation of Manzini's lightweight Deep-Shallow algorithm, which can also utilize multiple CPUs/cores for extra performance. The generated output is compatible with the output of mkvtree from the Vmatch package.
| Tags | Indexing/Search Bioinformatics |
|---|---|
| Licenses | GPL |
| Operating Systems | UNIX-like OSs |
| Implementation | C |
Recent releases
- 14 Jul 2009 21:05
Release Notes: This release no longer crashes if the input sequence ends in a wildcard character.
- 09 Jul 2009 10:34
Release Notes: A predefined alphabet was added for mixed DNA/RNA data. Minor bugfixes and changes have been applied. The configure script now automatically sets the runtime linker search path (rpath).
- 11 Jun 2009 12:34
Release Notes: Initial release on Freshmeat.
roberthomann
10 Jun 2009 17:37
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