Release Notes: Bugfixes were made. Preliminary support for gromacs-formatted coordinate files was added.


Release Notes: Bugfixes were made. Preliminary support for gromacs-formatted coordinate files was added.


Release Notes: Lots of bugfixes, extra unit tests, and documentation were introduced. All the remaining functionality needed to perform simple molecular dynamics and Monte-Carlo simulations was added.


Release Notes: The package system was cleaned up. Minor bugfixes were done.


Release Notes: This stable version features a pure Java classical force field (a simplistic version of the GROMOS96 force field), a (non-periodic)Poisson-Boltzmann solver, Dssp secondary structure assignment, limited support for SYBYL/MOL2 and X-PLOR file formats, and large amounts of documentation.


Release Notes: This is the first stable release. It features the basic building blocks for the analysis of molecular mechanics data. Its IO routines support formats that include GROMOS96, PDB, vmd/AMBER, and SYBYL/mol2. It has a Java linear algebra library, basic (geometric) analysis tools such as rmsds, fitting procedures, distance/angle/dihedral measurements, and hydrogen bond analysis.