Release Notes: The requested Quantitative traits feature was added.
Release Notes: This version is a port to the new SNPFile format version 2.0.
Release Notes: This version adds support for unphased genotype data through a perfect-phylogeny haplotyping algorithm. If enabled, the release will also support the SNPfile binary format.
Release Notes: This version adds some algorithmic speedups to the permutation testing.
Release Notes: This version provides functionality for quantitative trait mapping and for mapping pairs of genes in presence of epistatsis.