Release Notes: Many minor bugs were fixed. DBMS support was enhanced in Bio::DB::SeqFeature.
Release Notes: This is the first core release in the 1.6 series, and the first stable release after 5 years of development releases.
Release Notes: Many bugfixes and enhancements were made, including support for parsing the latest NCBI BLAST text format changes, PAML 3.15 support, a Taxonomy (Bio::Species) overhaul, a Bio::Map overhaul, a Bio::SearchIO speedup, the introduction of a Build.PL installation system, and fixes for some memory leaks in Bio::Tree. This version requires Perl 5.6.1 or later.
Release Notes: This release fixes broken code in the 1.5.0 release, deals with NCBI RemoteBlast changes, adds better BLAST parsing, and respects the 1.4.0 API.
Release Notes: This release includes several new modules and some code cleanup since the 1.4.0 branch. It is the initial code that will lead to the 1.6 stable branch release.
Release Notes: Over 3000 file changes have gone into this release since the 1.2 development tree was branched off from the main. Several new HOWTOs are available at http://bioperl.org/HOWTOs/. SimpleWebAnalysis, Trees, Feature Annotation, OBDA Access, and Flat Databases were added. This release is also paired with releases of bioperl-ext (C-extensions) and bioperl-run (Perl module wrappers around many common compbio applications).
Release Notes: This release fixes several bugs in Bio::SearchIO, Bio::TreeIO, Bio::SeqIO genbank parsing, several memory leaks with Features and Tree/Node objects, and several more important bugs listed in the Changes file. It also adds support for GFF3 in Bio::DB::GFF, and the tutorial for Bio::Graphics has be updated to reflect the most current API.
Release Notes: Numerous small bugs have been fixed, making this a necessary update to 1.2.1. The OBDA Registry code has been brought up to spec, numerous OntologyIO dagflat parsers have been brought up to snuff, a SearchIO::blast bug which missed last reports has been fixed, support has been added for NCBI eutils changes, Bio::TreeIO::newick can now parse labeled internal nodes, several Bio::DB::GFF fixes and new Bio::Graphics glyphs have been added, and fixes have been made to several parsers detailed in the Changes file.
Release Notes: WrapperBase is now included, making StandAloneBlast work from the release. Bio::Coordinate was fixed and cleaned up. Bio::Index::EMBL and bpindex were fixed.
Release Notes: This release represents improvements to various parsers (Bio::SearchIO, Bio::SeqIO), a simplified function based interface to the toolkit (Bio::Perl), and improvements to the documentation. Several new modules including Unigene, LocusLink, OMIM parsers, and Bio::Assembly for assembly data. There are fixes to allow Bio::DB::GenBank/GenPept to use the new NCBI Eutils interface; old versions of Bioperl and these modules will break when NCBI disables the old Web CGI interface.