MetaPath is a tool for the analysis of metabolic pathways and associated visualization of experimental data. Built on the MetaCyc database, it provides an interactive map in which multiple pathways can be simultaneously visualized. Multiple annotations from the MetaCyc database are available, including synonyms, associated reactions and pathways, and database unification links. Metabolomics change data can be imported via simple CSV formats for visualization on targeted pathways. Pathways can be mined and removed algorithmically to identify key regulated pathways within a given dataset, providing a simper route to metabolic functions.
Release Notes: Initial release of MetaPath as a Python package (via PyPi) .egg, and .gz, via github repo and downloadable Mac OS X .app bundle.
Gaupol is an editor for text-based subtitle files. It supports multiple subtitle file formats and provides means of creating subtitles, editing text, and timing subtitles to match video. The user interface is designed with attention to batch processing of multiple documents and convenience of translating.
Release Notes: This release restores drop-down arrows on undo and redo toolbar buttons, keeping track of recent files and zebra stripes, and fixes cell rendering speed issues.
TCExam is Web-based assessment software for generating and managing online tests and exams. It simplifies the exam cycle, including generation, execution, evaluation, presentation, and archiving.
Release Notes: This version contains some bugfixes and minor improvements.
IMAPFilter is a mail filtering utility. It connects to remote mail servers using the Internet Message Access Protocol (IMAP), sends searching queries to the server, and processes mailboxes based on the results.
Release Notes: This release parses server responses less strictly, prints more detailed information when there's an error, and fixes various bugs in the recovery mechanism.
With one click, FileMyFiles will organize all of the files on your desktop. There are powerful options to change file and folder names. It will uninstall applications and all of their related files and folders. It can selectively delete just some of the files and folders from the trash. It can also be scheduled to keep all of your important folders organized. Files are sorted and put into folders according to eight categories of file types: Words, Images, Audio, Compressed, Data, Layout, Video, and Web. FileMyFiles will keep all of your files organized, leaving your desktop and other important folders uncluttered and your files easy to find.
Release Notes: This release fixes a bug that in rare circumstances caused a crash when emptying some of the Trash.
QueueMetrics Espresso is an automated tool to get a working installation of QueueMetrics on the most common Asterisk-based PBXs. It currently supports FreePBX, AsteriskNOW (with FreePBX interface), TrixBox CE, PBX-in-a-Flash, and Elastix 2.
Release Notes: This version supports Elastix 1.6, Elastix 2.10 with Asterisk 10, and AsteriskNow 3.
Build Gear is a lightweight build tool for building embedded firmware. Its primary focus is to make it easy to create and maintain fully-customized embedded firmware. This is reflected in a straightforward commandline interface and support for easy-to-understand build files. The secondary focus is build performance and build integrity. Build Gear is easy to use and well-suited for rapid prototyping and product development of GNU/Linux firmware to be deployed in small-to-medium-sized embedded systems.
Release Notes: This is a feature and bugfix release. The most important new feature includes improved support for secure downloading of sources via any protocol that libcurl supports. In particular, this improvement is introduced to include support for sftp:// and scp:// type source URLs that make use of SSH keys for restricted access. This is useful if you want Build Gear to download and build proprietary applications from source hosted on access restricted servers.
974 Application Server helps with development of powerful Web applications emphasizing security and clustered load balancing which you can rapidly redistribute on the same cluster to other customers.
Release Notes: Early development of the real time directory. Bloggers/showcases and themes have been improved.
mod_musicindex is an Apache module aimed at being a C alternative to the Perl module Apache::MP3. It allows nice displaying of directories containing MP3, Ogg Vorbis, FLAC, or MP4/AAC files, including sorting them on various fields, streaming/downloading them, constructing playlists, and searching. It also provides features such as RSS and Podcast feeds, multiple CSS support, and archive downloads.
Release Notes: This release fixes a single bug introduced in 1.4.0 in which the tarball download was sending garbage.
BugHotel Reservation System is a hotel booking and accounting software package which uses the Internet to "network" your corporate office to each of your hotels. All data processing occurs at the Application Service Provider (ASP) data center. Income statements, reports, etc. may be customized.
Release Notes: This release added a debug setting to List Customers.
MetaFTPD is an FTP server/proxy with many features, including "MODE Z" compressed file transfers, file locking, chrooting, data-connection/firewall scripts, XSHA and XMD5 commands, and transparent proxying.
Release Notes: An RNTO bug was fixed. An incorrect reply code was being sent in the case of success. Other minor bugs were fixed.
Samba is a software suite that provides seamless file and print services to SMB/CIFS clients. It is freely available, unlike other SMB/CIFS implementations, and allows for interoperability between Linux/Unix servers and Windows-based clients.
Release Notes: This is the latest stable release of the Samba 4.0 release series.
Kigo Video Converter supports all popular video formats including AVI, DivX, XviD, MPEG-1, MPEG-2, WMV, ASF, MOV, VOB, MP4, 3GP, 3G2, or QuickTime into iPod, PSP, Zune, MP4, 3GP, 3G2, AVI, MPEG-1, MPEG-2, WMV, DivX, XviD, ASF, MOV, or VOB video files. It supports iPod, iPhone, PSP, Zune, and other portable media players and cell phones.
Release Notes: This release added support for converting multiple files at the same time, a setting for shutting down or putting your Mac to sleep after conversion finishes, and MOV format in the output profile. Several minor bugs were fixed. "Also Move to Trash" now deletes the whole DVD folder. A bug with converting to DV format was fixed.
KDE-Services extends the features of the Dolphin File Manager right-click menu in the KDE graphical environment. It allows you to play and convert between several video formats, extract audio from movies and convert them to MP3 or FLAC, convert audio to MP3 or FLAC, securely send a file or directory to Mailx as an email, send files to Thunderbird as attachments, burn and checksum ISO images, execute scripts and applications, get low-level information on video files, build ISO images from folders, replace text, search, SSH, use Midnight Commander, use system, network, and backup/restore tools, use Samba, extract subtitles from MKV video, multiplex subtitles into MPEG-2 videos, and work with YouTube, DVDs, multimedia, GPG. You can add a timestamp prefix to a filename or directory name. A paranoid shredder, an HTTP publisher, graphic tools, RPM package tools, Xorg configuration, and Dropbox tools are included.
Release Notes: In the "Package Tools", "Extract Files Here" and "Integrity Check" have been improved.
nut is nutrition software to record what you eat and analyze your meals for nutrient composition. The database included is the latest USDA Nutrient Database for Standard Reference. This database contains values for vitamins, minerals, fats, calories, protein, carbohydrates, fiber, etc., and includes the essential polyunsaturated fats, Omega-3 and Omega-6. Nutrient levels are expressed as a percentage of the Daily Value, the familiar standard of food labeling in the United States, but also can be fully customized. Foods can be added from recipes or food labels, and nutrient intake can be graphed. The program is completely menu-driven and there are no commands to learn.
Release Notes: This release fixed a bug in the display of trans fatty acids that was introduced in the previous release.